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Article

Rook, Victoria, Haldipur, Parthiv, Millen, Kathleen J, Butts, Thomas and Wingate, Richard (2024) BMP signalling facilitates transit amplification in the developing chick and human cerebellum. eLife, 12 (RP9294). ISSN 2050-084X

Butts, Thomas (2023) Research excellence: make funding governance more transparent. Nature, 620 (7973). p. 211. ISSN 1476-4687

Bond, Alistair P, Butts, Thomas and Tierney, Claire M (2023) Spot(ters) the difference: Bringing traditional anatomical examinations online. Clinical anatomy. ISSN 1098-2353

Butts, Thomas (2022) Evolution: The Origins and Mechanisms of Diversity. Journal of anatomy, 243 (1). pp. 211-183. ISSN 1469-7580

Yañez-Guerra, Luis Alfonso, Zhong, Xingxing, Moghul, Ismail, Butts, Thomas, Zampronio, Cleidiane G, Jones, Alexandra M, Mirabeau, Olivier and Elphick, Maurice R (2020) Echinoderms provide missing link in the evolution of PrRP/sNPF-type neuropeptide signalling. eLife, 9. ISSN 2050-084X

Hu, Youli, Butts, Thomas, Poopalasundaram, Subathra, Graham, Anthony and Bouloux, Pierre‐Marc (2019) Extracellular matrix protein anosmin‐1 modulates olfactory ensheathing cell maturation in chick olfactory bulb development. European Journal of Neuroscience, 50 (9). pp. 3472-3486. ISSN 0953-816X

Lipovsek, Marcela, Ledderose, Julia, Butts, Thomas, Lafont, Tanguy, Kiecker, Clemens, Wizenmann, Andrea and Graham, Anthony (2017) The emergence of mesencephalic trigeminal neurons. Neural Development, 12 (1). ISSN 1749-8104

Hanzel, Michalina, Wingate, Richard J.T. and Butts, Thomas (2015) Ex Vivo Culture of Chick Cerebellar Slices and Spatially Targeted Electroporation of Granule Cell Precursors. Journal of Visualized Experiments (106). ISSN 1940-087X

Smith, Moya M., Johanson, Zerina, Butts, Thomas, Ericsson, Rolf, Modrell, Melinda, Tulenko, Frank J., Davis, Marcus C. and Fraser, Gareth J. (2015) Making teeth to order: conserved genes reveal an ancient molecular pattern in paddlefish (Actinopterygii). Proceedings of the Royal Society B: Biological Sciences, 282 (1805). p. 20142700. ISSN 0962-8452

Butts, Thomas, Green, Mary J. and Wingate, Richard J. T. (2014) Development of the cerebellum: simple steps to make a ‘little brain’. Development, 141 (21). pp. 4031-4041. ISSN 0950-1991

Butts, Thomas, Hanzel, Michalina and Wingate, Richard J. T. (2014) Transit amplification in the amniote cerebellum evolved via a heterochronic shift in NeuroD1 expression. Development, 141 (14). pp. 2791-2795. ISSN 0950-1991

Graham, Anthony, Butts, Thomas, Lumsden, Andrew and Kiecker, Clemens (2014) What can vertebrates tell us about segmentation? EvoDevo, 5 (1). p. 24. ISSN 2041-9139

Butts, Thomas, Modrell, Melinda S., Baker, Clare V.H. and Wingate, Richard J.T. (2014) The evolution of the vertebrate cerebellum: absence of a proliferative external granule layer in a non‐teleost ray‐finned fish. Evolution & Development, 16 (2). pp. 92-100. ISSN 1520-541X

Broom, Emma R., Gilthorpe, Jonathan D., Butts, Thomas, Campo-Paysaa, Florent and Wingate, Richard J. T. (2012) The roof plate boundary is a bi-directional organiser of dorsal neural tube and choroid plexus development. Development, 139 (22). pp. 4261-4270. ISSN 0950-1991

Butts, Thomas, Chaplin, Natalie and Wingate, Richard J. T. (2011) Can Clues from Evolution Unlock the Molecular Development of the Cerebellum? Molecular Neurobiology, 43 (1). pp. 67-76. ISSN 0893-7648

Butts, Thomas, Holland, Peter W. H. and Ferrier, David E. K. (2010) Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression. Proceedings of the Royal Society B: Biological Sciences, 277 (1699). pp. 3381-3389. ISSN 0962-8452

Shigenobu, S., Bickel, R. D., Brisson, J. A., Butts, Thomas, Chang, C-c., Christiaens, O., Davis, G. K., Duncan, E. J., Ferrier, D. E. K., Iga, M., Janssen, R., Lin, G.-W., Lu, H.-L., McGregor, A. P., Miura, T., Smagghe, G., Smith, J. M., Van Der Zee, M., Velarde, R. A., Wilson, M. J., Dearden, P. K. and Stern, D. L. (2010) Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage-specific duplications and losses of developmental genes. Insect Molecular Biology, 19. pp. 47-62. ISSN 09621075

Eisen, Jonathan A., Butts, Thomas and The International Aphid Genomics Consortium, (2010) Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology, 8 (2). e1000313. ISSN 1545-7885

Takatori, Naohito, Butts, Thomas, Candiani, Simona, Pestarino, Mario, Ferrier, David E. K., Saiga, Hidetoshi and Holland, Peter W. H. (2008) Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae. Development Genes and Evolution, 218 (11-12). pp. 579-590. ISSN 0949-944X

Zhong, Ying-Fu, Butts, Thomas and Holland, Peter W. H. (2008) HomeoDB: a database of homeobox gene diversity. Evolution & Development, 10 (5). pp. 516-518. ISSN 1520-541X

Putnam, Nicholas H., Butts, Thomas, Ferrier, David E. K., Furlong, Rebecca F., Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutiérrez, E`lia, Dubchak, Inna, Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J., Grigoriev, Igor V., Horton, Amy C., de Jong, Pieter J., Jurka, Jerzy, Kapitonov, Vladimir V., Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A., Salamov, Asaf A., Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z., Holland, Peter W. H., Satoh, Nori and Rokhsar, Daniel S. (2008) The amphioxus genome and the evolution of the chordate karyotype. Nature, 453 (7198). pp. 1064-1071. ISSN 0028-0836

Holland, Linda Z., Albalat, Ricard, Azumi, Kaoru, Benito-Gutiérrez, Èlia, Blow, Matthew J., Bronner-Fraser, Marianne, Brunet, Frederic, Butts, Thomas, Candiani, Simona, Dishaw, Larry J., Ferrier, David E.K., Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J., Gissi, Carmela, Godzik, Adam, Hallböök, Finn, Hirose, Dan, Hosomichi, Kazuyoshi, Ikuta, Tetsuro, Inoko, Hidetoshi, Kasahara, Masanori, Kasamatsu, Jun, Kawashima, Takeshi, Kimura, Ayuko, Kobayashi, Masaaki, Kozmik, Zbynek, Kubokawa, Kaoru, Laudet, Vincent, Litman, Gary W., McHardy, Alice C., Meulemans, Daniel, Nonaka, Masaru, Olinski, Robert P., Pancer, Zeev, Pennacchio, Len A., Pestarino, Mario, Rast, Jonathan P., Rigoutsos, Isidore, Robinson-Rechavi, Marc, Roch, Graeme, Saiga, Hidetoshi, Sasakura, Yasunori, Satake, Masanobu, Satou, Yutaka, Schubert, Michael, Sherwood, Nancy, Shiina, Takashi, Takatori, Naohito, Tello, Javier, Vopalensky, Pavel, Wada, Shuichi, Xu, Anlong, Ye, Yuzhen, Yoshida, Keita, Yoshizaki, Fumiko, Yu, Jr-Kai, Zhang, Qing, Zmasek, Christian M., de Jong, Pieter J., Osoegawa, Kazutoyo, Putnam, Nicholas H., Rokhsar, Daniel S., Satoh, Noriyuki and Holland, Peter W.H. (2008) The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Research, 18 (7). pp. 1100-1111. ISSN 1088-9051

Butts, Thomas, Holland, Peter W.H. and Ferrier, David E.K. (2008) The Urbilaterian Super-Hox cluster. Trends in Genetics, 24 (6). pp. 259-262. ISSN 0168-9525

Richards, Stephen, Gibbs, Richard A, Weinstock, George M, Brown, Susan J, Denell, Robin, Beeman, Richard W, Gibbs, Richard, Beeman, Richard W, Brown, Susan J, Bucher, Gregor, Friedrich, Markus, Grimmelikhuijzen, Cornelis J P, Klingler, Martin, Lorenzen, Marce, Richards, Stephen, Roth, Siegfried, Schröder, Reinhard, Tautz, Diethard, Zdobnov, Evgeny M, Muzny, Donna, Gibbs, Richard A, Weinstock, George M, Attaway, Tony, Bell, Stephanie, Buhay, Christian J, Chandrabose, Mimi N, Chavez, Dean, Clerk-Blankenburg, Kerstin P, Cree, Andrew, Dao, Marvin, Davis, Clay, Chacko, Joseph, Dinh, Huyen, Dugan-Rocha, Shannon, Fowler, Gerald, Garner, Toni T, Garnes, Jeffrey, Gnirke, Andreas, Hawes, Alica, Hernandez, Judith, Hines, Sandra, Holder, Michael, Hume, Jennifer, Jhangiani, Shalini N, Joshi, Vandita, Khan, Ziad Mohid, Jackson, LaRonda, Kovar, Christie, Kowis, Andrea, Lee, Sandra, Lewis, Lora R, Margolis, Jon, Morgan, Margaret, Nazareth, Lynne V, Nguyen, Ngoc, Okwuonu, Geoffrey, Parker, David, Richards, Stephen, Ruiz, San-Juana, Santibanez, Jireh, Savard, Joël, Scherer, Steven E, Schneider, Brian, Sodergren, Erica, Tautz, Diethard, Vattahil, Selina, Villasana, Donna, White, Courtney S, Wright, Rita, Park, Yoonseong, Beeman, Richard W, Lord, Jeff, Oppert, Brenda, Lorenzen, Marce, Brown, Susan, Wang, Liangjiang, Savard, Joël, Tautz, Diethard, Richards, Stephen, Weinstock, George, Gibbs, Richard A, Liu, Yue, Worley, Kim, Weinstock, George, Elsik, Christine G, Reese, Justin T, Elhaik, Eran, Landan, Giddy, Graur, Dan, Arensburger, Peter, Atkinson, Peter, Beeman, Richard W, Beidler, Jim, Brown, Susan J, Demuth, Jeffery P, Drury, Douglas W, Du, Yu-Zhou, Fujiwara, Haruhiko, Lorenzen, Marce, Maselli, Vincenza, Osanai, Mizuko, Park, Yoonseong, Robertson, Hugh M, Tu, Zhijian, Wang, Jian-jun, Wang, Suzhi, Richards, Stephen, Song, Henry, Zhang, Lan, Sodergren, Erica, Werner, Doreen, Stanke, Mario, Morgenstern, Burkhard, Solovyev, Victor, Kosarev, Peter, Brown, Garth, Chen, Hsiu-Chuan, Ermolaeva, Olga, Hlavina, Wratko, Kapustin, Yuri, Kiryutin, Boris, Kitts, Paul, Maglott, Donna, Pruitt, Kim, Sapojnikov, Victor, Souvorov, Alexandre, Mackey, Aaron J, Waterhouse, Robert M, Wyder, Stefan, Zdobnov, Evgeny M, Zdobnov, Evgeny M, Wyder, Stefan, Kriventseva, Evgenia V, Kadowaki, Tatsuhiko, Bork, Peer, Aranda, Manuel, Bao, Riyue, Beermann, Anke, Berns, Nicola, Bolognesi, Renata, Bonneton, François, Bopp, Daniel, Brown, Susan J, Bucher, Gregor, Butts, Thomas, Chaumot, Arnaud, Denell, Robin E, Ferrier, David E K, Friedrich, Markus, Gordon, Cassondra M, Jindra, Marek, Klingler, Martin, Lan, Que, Lattorff, H Michael G, Laudet, Vincent, von Levetsow, Cornelia, Liu, Zhenyi, Lutz, Rebekka, Lynch, Jeremy A, da Fonseca, Rodrigo Nunes, Posnien, Nico, Reuter, Rolf, Roth, Siegfried, Savard, Joël, Schinko, Johannes B, Schmitt, Christian, Schoppmeier, Michael, Schröder, Reinhard, Shippy, Teresa D, Simonnet, Franck, Marques-Souza, Henrique, Tautz, Diethard, Tomoyasu, Yoshinori, Trauner, Jochen, Van der Zee, Maurijn, Vervoort, Michel, Wittkopp, Nadine, Wimmer, Ernst A, Yang, Xiaoyun, Jones, Andrew K, Sattelle, David B, Ebert, Paul R, Nelson, David, Scott, Jeffrey G, Beeman, Richard W, Muthukrishnan, Subbaratnam, Kramer, Karl J, Arakane, Yasuyuki, Beeman, Richard W, Zhu, Qingsong, Hogenkamp, David, Dixit, Radhika, Oppert, Brenda, Jiang, Haobo, Zou, Zhen, Marshall, Jeremy, Elpidina, Elena, Vinokurov, Konstantin, Oppert, Cris, Zou, Zhen, Evans, Jay, Lu, Zhiqiang, Zhao, Picheng, Sumathipala, Niranji, Altincicek, Boran, Vilcinskas, Andreas, Williams, Michael, Hultmark, Dan, Hetru, Charles, Jiang, Haobo, Grimmelikhuijzen, Cornelis J P, Hauser, Frank, Cazzamali, Giuseppe, Williamson, Michael, Park, Yoonseong, Li, Bin, Tanaka, Yoshiaki, Predel, Reinhard, Neupert, Susanne, Schachtner, Joachim, Verleyen, Peter, Raible, Florian, Bork, Peer, Friedrich, Markus, Walden, Kimberly K O, Robertson, Hugh M, Angeli, Sergio, Forêt, Sylvain, Bucher, Gregor, Schuetz, Stefan, Maleszka, Ryszard, Wimmer, Ernst A, Beeman, Richard W, Lorenzen, Marce, Tomoyasu, Yoshinori, Miller, Sherry C, Grossmann, Daniela and Bucher, Gregor (2008) The genome of the model beetle and pest Tribolium castaneum. Nature, 452 (7190). pp. 949-55. ISSN 1476-4687

Butts, Thomas and Tribolium Genome Sequencing Consortium, (2008) The genome of the model beetle and pest Tribolium castaneum. Nature, 452 (7190). pp. 949-955. ISSN 0028-0836

Book Section

Wishart, Hannah/HW, Arthur, Ray and Butts, Thomas (2025) Outlining the relationship between the English Youth Justice System and the Developmental Neurobiology of the Human Brain. In: International Perspectives of Neuroscience in the Youth Justice Courtroom. Routledge Contemporary Issues in Criminal Justice and Procedure . Routledge. ISBN 9781032571133 (In Press)

Butts, Thomas, Rook, Victoria, Varela, Tristan, Wilson, Leigh and Wingate, Richard (2021) Specification of Granule Cells and Purkinje Cells. In: Handbook of the Cerebellum and Cerebellar Disorders. Springer, p. 211. ISBN 978-3-319-97911-3

Other

Butts, Thomas (2014) University managers misled by metrics. Nature. 511, 534 (2014).

Butts, Thomas and Graham, Anthony (2013) Old before their time: the ancient origins of the neural crest [News]. Pigment Cell and Melanoma Research. 26 (3).